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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0905 [new locus tag: SACOL_RS04645 ]
  • pan locus tag?: SAUPAN002870000
  • symbol: SACOL0905
  • pan gene symbol?:
  • synonym:
  • product: pathogenicity island protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0905 [new locus tag: SACOL_RS04645 ]
  • symbol: SACOL0905
  • product: pathogenicity island protein
  • replicon: chromosome
  • strand: +
  • coordinates: 915263..915604
  • length: 342
  • essential: unknown

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGGATAAAAAGCAAATAAAAGACTTCGTTTGTGATTATCATAAGCGAACTAGAAGTGAT
    GTGTTGATAGATGATGAAATAAATACCGATGAATTCTTTTCAATAGGTGATGAAAATTCC
    AATGAATGGATGGCAGACGATAACATTGATGATCATATTGTAAAGAATCACTTAGAAATC
    ATTGTTGACCGAGTAGCTAATGATAAAGAGTTTTATATTTTCGATTCTTTAATACAAGGA
    CGTAGTTTTAAAGATATTAGTAATGTCTTAGAGTGTTCAGAACAATCTGTAAGATTATGG
    TATGAAACCTTATTAGATAAAATTGTGGAGGTGATAGAATGA
    60
    120
    180
    240
    300
    342

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL0905 [new locus tag: SACOL_RS04645 ]
  • symbol: SACOL0905
  • description: pathogenicity island protein
  • length: 113
  • theoretical pI: 4.11903
  • theoretical MW: 13420.8
  • GRAVY: -0.523894

Function[edit | edit source]

  • TIGRFAM:
    RNA polymerase sigma factor, sigma-70 family (TIGR02937; HMM-score: 18.9)
  • TheSEED  :
    • Hypothetical SAV0799 homolog in superantigen-encoding pathogenicity islands SaPI
    Phages, Prophages, Transposable elements, Plasmids Pathogenicity islands Staphylococcal pathogenicity islands SaPI  Hypothetical SAV0799 homolog in superantigen-encoding pathogenicity islands SaPI
  • PFAM:
    HTH (CL0123) GerE; Bacterial regulatory proteins, luxR family (PF00196; HMM-score: 19.5)
    Phage_terminase; Phage terminase small subunit (PF10668; HMM-score: 17.8)
    and 3 more
    HTH_Tnp_ISL3; Helix-turn-helix domain of transposase family ISL3 (PF13542; HMM-score: 13.7)
    Sigma70_r4_2; Sigma-70, region 4 (PF08281; HMM-score: 13.5)
    PDDEXK (CL0236) NgoMIV_restric; NgoMIV restriction enzyme (PF09015; HMM-score: 12)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00269
    • TAT(Tat/SPI): 0.000396
    • LIPO(Sec/SPII): 0.000732
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MDKKQIKDFVCDYHKRTRSDVLIDDEINTDEFFSIGDENSNEWMADDNIDDHIVKNHLEIIVDRVANDKEFYIFDSLIQGRSFKDISNVLECSEQSVRLWYETLLDKIVEVIE

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]