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Revision as of 23:18, 10 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI date : _

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0290 [new locus tag: SACOL_RS01470 ]
  • pan locus tag?: SAUPAN001206000
  • symbol: SACOL0290
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0290 [new locus tag: SACOL_RS01470 ]
  • symbol: SACOL0290
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 328193..328876
  • length: 684
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID: 3236647 NCBI
  • RefSeq: YP_185184 NCBI

⊟Phenotype[edit | edit source]

  • Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGACTACTAAGGAAAATATAGACATTCTTCGAAAGCCAGGTGCACAAGCCTTAAGTTTA
    GCATCATTATTTATGATACTTTTTTCATGTCTAACTTTCTTTTTTGGTTTAGATTATGAA
    AGGTTTCCAAATTATTTAAAGATAACGACAATTATAGAATTAATAATTATCATAATTAGT
    TTACTTCAATGGATTAGATTTATAGATTTCGAAAAGGAAAGCGCACAGAAATATAAGAAA
    ATATATGCCCGATTTTTAGTTATTATAAATGTGCTAACTACTATCACCGCAGTATTTGCA
    ACATGTAACCTTTATTATTTTGTTGCTGTACAAAATCATTATGACCTATTCAATTATTGG
    TTGATGGGTACGATTTCAATCATAATTAGTTATTTGTTATTAGTAATTGGCGGAATGTTC
    ACGTTATTAAAATTACCTAAAGTAACAAAACGTTGGGGTGGTAAAACTAAAACACATTTC
    GGTTTATTATTAACCGCGTTGAGCGCATTTATATATATTGAAAGAATTATCGAATATATA
    TTGGTGCCCAATGTCGTAGAATCCAAGTTTGTCATAATGGTAAGTATCATTATTATTGCT
    TGTACACAATTTGTGGCATTTCAATTTATTATGCAATACAGTAGATTCTATATTTTTGAA
    TTAAACACTGAAGATGATGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    684

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0290 [new locus tag: SACOL_RS01470 ]
  • symbol: SACOL0290
  • description: hypothetical protein
  • length: 227
  • theoretical pI: 8.70412
  • theoretical MW: 26504.5
  • GRAVY: 0.717181

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01107881: hypothetical protein
  • PFAM:
    no clan defined DUF5079; Domain of unknown function (DUF5079) (PF16882; HMM-score: 310)
    and 2 more
    H_PPase; Inorganic H+ pyrophosphatase (PF03030; HMM-score: 9.7)
    DUF4231; Protein of unknown function (DUF4231) (PF14015; HMM-score: 7.5)

⊟Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • interaction partners:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002326
    • TAT(Tat/SPI): 0.000359
    • LIPO(Sec/SPII): 0.483804
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

  • GI: 57652563 NCBI
  • UniProt: A0A0H2X1C9 UniProt
  • protein Genbank : _
  • RefSeq: YP_185184 NCBI

⊟Protein sequence[edit | edit source]

  • MTTKENIDILRKPGAQALSLASLFMILFSCLTFFFGLDYERFPNYLKITTIIELIIIIISLLQWIRFIDFEKESAQKYKKIYARFLVIINVLTTITAVFATCNLYYFVAVQNHYDLFNYWLMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSAFIYIERIIEYILVPNVVESKFVIMVSIIIIACTQFVAFQFIMQYSRFYIFELNTEDDD

⊟Peptides[edit | edit source]

  • experimentally validated:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • sigma factors : _
  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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