From AureoWiki
Revision as of 00:29, 11 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
Jump to navigation Jump to search

NCBI date : _

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2090 [new locus tag: SA_RS12010 ]
  • pan locus tag?: SAUPAN005762000
  • symbol: SA2090
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2090 [new locus tag: SA_RS12010 ]
  • symbol: SA2090
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2348872..2349198
  • length: 327
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Gene ID: 1125014 NCBI
  • RefSeq: NP_375409 NCBI

⊟Phenotype[edit | edit source]

  • Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGATTTTAGATAATGTGAATCCGAATGATTTATTTCCAACTGAAAAAAAGGGTCCGTCA
    GTGCTAGGAATAATTGAGTATCAAGTTCAAGGTGAGAATGAATTTGAAGGGGCATTTATA
    GCAACAAATGAAAGATTAATTATGAATGTAGATATGAATGGCCAATTTTATTATAGAAGT
    ATTAGTTATAATGAAATAGAGAAGATAGATTATGATGGTCAAACTATAATGTTCAAATTT
    AATATTGGTAATGTCCCAATGCATGATATTAAAAGTGATAACGTTGAAATGTTTGTTGAA
    TATGTAAAACAACATATGATAGTATAA
    60
    120
    180
    240
    300
    327

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2090 [new locus tag: SA_RS12010 ]
  • symbol: SA2090
  • description: hypothetical protein
  • length: 108
  • theoretical pI: 4.1953
  • theoretical MW: 12578.2
  • GRAVY: -0.306481

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein SAV2296
  • PFAM:
    PH (CL0266) bPH_3; Bacterial PH domain (PF14470; HMM-score: 50.9)

⊟Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • interaction partners:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003663
    • TAT(Tat/SPI): 0.000231
    • LIPO(Sec/SPII): 0.000499
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 15927876 NCBI
  • UniProt: A0A0H3JRD7 UniProt
  • protein Genbank : _
  • RefSeq: NP_375409 NCBI

⊟Protein sequence[edit | edit source]

  • MILDNVNPNDLFPTEKKGPSVLGIIEYQVQGENEFEGAFIATNERLIMNVDMNGQFYYRSISYNEIEKIDYDGQTIMFKFNIGNVPMHDIKSDNVEMFVEYVKQHMIV

⊟Peptides[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • sigma factors : _
  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA2090&oldid=77500"