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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS10865 [old locus tag: NWMN_1888 ]
  • pan locus tag?: SAUPAN005048000
  • symbol: NWMN_RS10865
  • pan gene symbol?:
  • synonym:
  • product: phage tail tape measure protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS10865 [old locus tag: NWMN_1888 ]
  • symbol: NWMN_RS10865
  • product: phage tail tape measure protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2101579..2106108
  • length: 4530
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_009641 (2101579..2106108) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1888

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
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    2521
    2581
    2641
    2701
    2761
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    2941
    3001
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    3121
    3181
    3241
    3301
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    3841
    3901
    3961
    4021
    4081
    4141
    4201
    4261
    4321
    4381
    4441
    4501
    ATGGGAGAAAGAATAAAAGGTTTATCTATAGGTTTGGATTTAGATGCAGCAAATTTAAAT
    AGATCATTTGCAGAAATCAAACGAAACTTTAAAACTTTAAATTCTGACTTAAAATTAACC
    GGTAACAACTTCAAATATACCGAAAAATCAACTCATAGTTACAAACAAAGGATTAAAGAA
    CTTGATGGAACTATCACAGGTTATAAGAAAAACGTTGATGATTTAGCCAAGCAATATGGC
    AAGGTATCTCAAGAACAGGGCGAAAACAGCGCGGAAGCTCAAAAATTACGACAAGAATAT
    AACAAACAAGCAAATGAGCTGAATTTTTTAGAAAAAGAACTAGAAAAAACAACAACTGAG
    TTTGAAGAGTTCAAAAAAGCTCAAGTTGAAGCTCAAAGAATGGCAGAAAGTGGCTGGGGA
    AAAACCAGTAAAGTTTTTGAAAGTATGGGACCTAAATTAACAAAAATGGGTGATGGTTTA
    AAATCCATTGGTAAAGGTTTGATGATTGGTGTAACTGCACCTGTTTTAGGTATTGCAGCA
    GCATCAGGAAAAGCTTTTGCAGAAGTTGATAAAGGTTTAGATACAGTTACCCAAGCAACA
    GGAGCAACCGGCGGAGAGCTTAAGAAGTTGCAGAATTCATTTAAAGATGTTTATGGCAAC
    TTTCCAGCAGACGCTGAGACTGTAGGCGGTGTTTTAGGGGAAGTTAACACAAGGTTAGGT
    TTCACTGGCAAAGAACTTGAGAGTGCCACAGAGTCATTCTTGAAATTTAGTCACATAACA
    GGTTCTGACGGCGTACAAGCCGTTCAATTAATTACGCGTGCAATGGGTGATGCAGGTATT
    GAAGCTGATGAGTATCAAAGTGTACTTGATATGGTAGCGAAAGCAGCACAGGCTAGCGGT
    ATAAGTGTTGATACATTAGCTGATAGCATTACTAAATACGGTGCTCCAATGAGGGCTATG
    GGCTTTGAGATGAAAGAATCAATCGCTTTATTCTCTCAATGGGAGAAATCAGGTGTTAAT
    ACTGAAATAGCCTTCAGTGGTTTGAAAAAAGCTATATCCAATTGGGGTAAAGCGGGTAAA
    GACCCAAGAGAAGAATTTAAGAAGACATTAGCAGAAATTGAAAGGACACCGGATATAGCT
    AGCGCAACAAGTTTAGCGATTGAAGCATTTGGTGCAAAAGCAGGTCCTGATTTAGCAGAT
    GCTATTAAAGGCGGTCGCTTTAGTTACCAAGAGTTCTTAAAAACTATCGAAGATTCGCAA
    GGAACGGTCAATCAGACATTTAAAGATTCTGAAAGTGGCTCCGAAAGATTTAAAGTAGCA
    ATGAATAAACTTAAATTAGTAGGTGCTGATGTATGGGCTTCTATTGAAAGTGCGTTTGCT
    CCAGTCATGGAAGAATTAATCAAAAAGCTATCTGTAGCAGTTGATTGGTTTTCAAGTTTA
    AGTGATGGATCTAAAAGGTCGATTGTTATATTCGGTGGTATTGCTGCTGCAATTGGTCCT
    GTAGTTTTTGGATTAGGTGCATTCATAAGCACAATTGGCAACGCAGTAACTGTATTAGCT
    CCATTATTAGCTAGTATTGTAAAGGCTGGCGGATTGATTAGTTTTTTATCAACTAAAGTG
    CCTATTTTAGGAACAGTCTTCACAGCATTAACTGGTCCAATTGGTATCGTGTTAGGTGTA
    CTGGCTGGTTTAGCAGTCGCATTTACAATAGCTTATAAGAAATCTGAAACATTCAGAAAT
    TTTGTTAATGGTGCAATTAACAGTGTTAAACAAACGTTTAGTAATTTCATTCAATTTATC
    CAACCTTTCATTGATTCCGTTAAAAACGTCTTTAAACAAGCGGTTTCAGCAATCGTTGAT
    TTCGCTAAAGATATTTGGAGTCAAATTAATGGATTCTTTAATGAAAACGGAATTTCTATT
    GTTCAAGCGCTTCAAAATATATGCAATTTTATCAAAGCTATATTTGAATTTATCTTAAAT
    TTTGTAATTAAACCAATCATGTTTGCGATTTGGCAAGTGATGCAATTTATTTGGCCGGCG
    GTTAAAGCCTTGATTGTCAGTACTTGGGAGAATATAAAAGGAGTAATACAAGGTGCTTTA
    AATATCATACTTGGCTTTATTAAGTTCTTTTCAAGTTTATTCACTGGTAATTGGCGAGGT
    GTTTGGGACGGTATTGTGATGATACTAAAAGGCACTGTGCAGTTAATTTGGAATTTAATA
    CAACTGTGGTTTGTAGGTAAGATTCTAGGTGTTGTTAGATACTTTGGTGGATTGCTTAAA
    GGTTTAATATCCGGTATCTGGGGTGTTATCAAAGGTATTTTCACAAAATCATTATCTGCA
    ATTTGGAATGCAACGAAAAGTATTTTTGGTTTCTTATACAATAGTGTTAAATCTATTTTC
    ACTAATATGAAAAACTGGTTATCTAGTACGTGGAATAATATCAAAAGCAATACCGTCGGC
    AAGGCTCATTCGTTATTTACGGGTGTAAGGTCTAAATTCACAAGTTTATGGAATGCGACG
    AAAGATATATTTACTAAATTAAGAAATTGGATGTCAAACATCTGGAACTCTATTAAAGAT
    AACACGGTAGGTATAGCGGGTCGCTTATGGGATAGAGTGCGTAACATCTTTGGAAGCATG
    CGTGACGGTTTAAAATCTATCATTAGTAAAATTAAAGATCATATCGGTGGTATGGTAGAC
    GCTGTTAAAAGAGGTCTTAATAAATTAATTGAAGGTTTAAACTGGGTCGGTGGTAAGTTG
    GGTATGGACAAAATACCGAAGTTACACACTGGTACTGAACATACACATACTACTACAAGA
    TTAGTTAAGAACGGTAAGATTGCACGTGACACATTCGCTACAGTTGGGGATAAGGGACGC
    GGAAATGGTCCAAATGGTTTCAGAAATGAAATGATTGAATTCCCTAATGGTAAACGTGTA
    ATCACACCAAATACAGATACTACGGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGG
    GCACAAACTTATTCAATGTTAAACGGAACGCTTCCGAGATTTAGTTTAGGTACTATGTGG
    AAAGATATTAAATCTGGTGCATCATCGGCATTTAACTGGACAAAAGATAAAATAGGTAAA
    GGTACCAAATGGCTTGGCGATAAAGTTGGCGATGTTTTAGATTTTATGGAAAATCCAGGC
    AAACTTTTAAATTATATACTTGAAGCTTTTGGAATTGATTTCAATTCTTTAACTAAAGGT
    ATGGGAATTGCAGGCGACATAACAAAAGCTGCATGGTCTAAGATTAAGAAAAGTGCTACT
    GATTGGATAAAAGAAAATTTAGAAGCTATGGGCGGTGGCGATTTAGTCGGTGGAATATTA
    GACCCTGACAAAATTAATTATCATTATGGACGTACCGCAGCTTATACCGCTGCAACTGGA
    AGACCATTTCATGAAGGTGTCGATTTTCCATTTGTATATCAAGAAGTTAGAACGCCGATG
    GGTGGCAGACTTACAAGAATGCCATTTATGTCTGGTGGTTATGGTAATTATGTAAAAATT
    ACTAGTGGCGTTATCGATATGCTATTTGCGCATTTGAAAAACTTTAGCAAATCACCACCT
    AGTGGCACGATGGTAAAGCCCGGTGATGTTGTTGGTTTAACTGGTAATACCGGATTTAGT
    ACAGGACCACATTTACATTTTGAAATGAGGAGAAATGGAAGACATTTTGACCCTGAACCA
    TATTTAAGGAATGCTAAGAAAAAAGGTAGGTTATCAATTGGTGGCGGTGGCGCTACTTCT
    GGAAGTGGTGCAACTTATGCCAGCCGAGTAATCCGACAAGCACAAAGTATTTTAGGAGGA
    CGTTATAAAGGTAAGTGGATTCATGACCAGATGATGCGAGTTGCAAAGCGCGAAAGTAAC
    TATCAATCAAATGCAGTGAATAATTGGGACATTAATGCTCAAAGAGGAGACCCGTCTAGA
    GGATTATTCCAAATTATCGGCTCAACTTTTAGAGCTAACGCTAAACGAGGGTACACTAAT
    TATAATAATCCAGTACATCAAGGTATCTCAGCAATGCAGTACATTGTTAGACGATATGGT
    TGGGGTGGTTTTAAACGTGCTGGTGATTACGCATATGCTACAGGTGGAAAAGTTTTTGAT
    GGTTGGTATAACTTAGGTGAAGACGGTCATCCAGAATGGATTATTCCAACAGATCCAGCT
    CGTAGAAATGATGCAATGAAGATTTTGCATTATGCAGCAGCAGAAGTAAGAGGGAAAAAA
    GCGAGTAAAAATAAGCGTCCTAGCCAATTATCAGACTTAAACGGGTTTGATGATCCTAGC
    TTATTATTGAAAATGATTGAACAACAGCAACAACAAATAGCTTTATTACTGAAAATAGCA
    CAATCTAACGATGTGATTGCAGATAAAGATTATCAGCCGATTATTGACGAATACGCTTTT
    GATAAAAAGGTGAACGCGTCTATAGAAAAGCGAGAAAGGCAAGAATCAACAAAAGTAAAG
    TTTAGAAAAGGAGGAATTGCTATTCAATGA
    60
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    2160
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    3180
    3240
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    4500
    4530

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_RS10865 [old locus tag: NWMN_1888 ]
  • symbol: NWMN_RS10865
  • description: phage tail tape measure protein
  • length: 1509
  • theoretical pI: 10.2657
  • theoretical MW: 165439
  • GRAVY: -0.203048

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage tail tape measure protein, TP901 family, core region (TIGR01760; HMM-score: 65.3)
    and 11 more
    two transmembrane protein (TIGR04527; HMM-score: 26.1)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 24.3)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 24.3)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 23.8)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 23.8)
    Unknown function Enzymes of unknown specificity quinoprotein relay system zinc metallohydrolase 2 (TIGR04559; EC 3.-.-.-; HMM-score: 13.6)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaD domain protein (TIGR01446; HMM-score: 13)
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions DnaD domain protein (TIGR01446; HMM-score: 13)
    Genetic information processing Protein synthesis tRNA aminoacylation serine--tRNA ligase (TIGR00414; EC 6.1.1.11; HMM-score: 11.7)
    phasin (TIGR01985; HMM-score: 8.8)
    SH3 domain protein (TIGR04211; HMM-score: 8.1)
  • TheSEED: data available for N315, USA300_FPR3757
  • PFAM:
    no clan defined PhageMin_Tail; Phage-related minor tail protein (PF10145; HMM-score: 66.9)
    Hybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 61.9)
    and 27 more
    Lysozyme (CL0037) SLT; Transglycosylase SLT domain (PF01464; HMM-score: 25.6)
    no clan defined DUF948; Bacterial protein of unknown function (DUF948) (PF06103; HMM-score: 17.7)
    GAS; Growth-arrest specific micro-tubule binding (PF13851; HMM-score: 17.6)
    TMP_2; Prophage tail length tape measure protein (PF06791; HMM-score: 17.1)
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein (PF07926; HMM-score: 16.7)
    Goodbye; fungal STAND N-terminal Goodbye domain (PF17109; HMM-score: 16)
    EsxAB (CL0352) WXG100; Proteins of 100 residues with WXG (PF06013; HMM-score: 14.4)
    no clan defined YtxH; YtxH-like protein (PF12732; HMM-score: 14.4)
    Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 14.2)
    EzrA; Septation ring formation regulator, EzrA (PF06160; HMM-score: 14)
    Laminin_I; Laminin Domain I (PF06008; HMM-score: 13.5)
    FapA; Flagellar Assembly Protein A (PF03961; HMM-score: 13.4)
    BCLiA (CL0551) APG6; Autophagy protein Apg6 (PF04111; HMM-score: 12.9)
    no clan defined DUF745; Protein of unknown function (DUF745) (PF05335; HMM-score: 12.4)
    TACC; Transforming acidic coiled-coil-containing protein (TACC) (PF05010; HMM-score: 12.1)
    TMPIT; TMPIT-like protein (PF07851; HMM-score: 11.5)
    HTH (CL0123) Mnd1; Mnd1 family (PF03962; HMM-score: 11.2)
    no clan defined Spc24; Spc24 subunit of Ndc80 (PF08286; HMM-score: 10.1)
    BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2 (PF10046; HMM-score: 10)
    DUF16; Protein of unknown function DUF16 (PF01519; HMM-score: 9.8)
    tRNA_bind_arm (CL0298) Seryl_tRNA_N; Seryl-tRNA synthetase N-terminal domain (PF02403; HMM-score: 9.7)
    no clan defined IFT57; Intra-flagellar transport protein 57 (PF10498; HMM-score: 9.6)
    OmpH; Outer membrane protein (OmpH-like) (PF03938; HMM-score: 9.1)
    Phage_GPO; Phage capsid scaffolding protein (GPO) serine peptidase (PF05929; HMM-score: 8.8)
    Tho2; Transcription factor/nuclear export subunit protein 2 (PF11262; HMM-score: 7.8)
    Carbpep_Y_N; Carboxypeptidase Y pro-peptide (PF05388; HMM-score: 6.6)
    DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 6.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 9.35
    • Cellwall Score: 0.32
    • Extracellular Score: 0.32
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.020835
    • TAT(Tat/SPI): 0.002675
    • LIPO(Sec/SPII): 0.001517
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MGERIKGLSIGLDLDAANLNRSFAEIKRNFKTLNSDLKLTGNNFKYTEKSTHSYKQRIKELDGTITGYKKNVDDLAKQYGKVSQEQGENSAEAQKLRQEYNKQANELNFLEKELEKTTTEFEEFKKAQVEAQRMAESGWGKTSKVFESMGPKLTKMGDGLKSIGKGLMIGVTAPVLGIAAASGKAFAEVDKGLDTVTQATGATGGELKKLQNSFKDVYGNFPADAETVGGVLGEVNTRLGFTGKELESATESFLKFSHITGSDGVQAVQLITRAMGDAGIEADEYQSVLDMVAKAAQASGISVDTLADSITKYGAPMRAMGFEMKESIALFSQWEKSGVNTEIAFSGLKKAISNWGKAGKDPREEFKKTLAEIERTPDIASATSLAIEAFGAKAGPDLADAIKGGRFSYQEFLKTIEDSQGTVNQTFKDSESGSERFKVAMNKLKLVGADVWASIESAFAPVMEELIKKLSVAVDWFSSLSDGSKRSIVIFGGIAAAIGPVVFGLGAFISTIGNAVTVLAPLLASIVKAGGLISFLSTKVPILGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAINSVKQTFSNFIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQALQNICNFIKAIFEFILNFVIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGVIQGALNIILGFIKFFSSLFTGNWRGVWDGIVMILKGTVQLIWNLIQLWFVGKILGVVRYFGGLLKGLISGIWGVIKGIFTKSLSAIWNATKSIFGFLYNSVKSIFTNMKNWLSSTWNNIKSNTVGKAHSLFTGVRSKFTSLWNATKDIFTKLRNWMSNIWNSIKDNTVGIAGRLWDRVRNIFGSMRDGLKSIISKIKDHIGGMVDAVKRGLNKLIEGLNWVGGKLGMDKIPKLHTGTEHTHTTTRLVKNGKIARDTFATVGDKGRGNGPNGFRNEMIEFPNGKRVITPNTDTTAYLPKGSKVYNGAQTYSMLNGTLPRFSLGTMWKDIKSGASSAFNWTKDKIGKGTKWLGDKVGDVLDFMENPGKLLNYILEAFGIDFNSLTKGMGIAGDITKAAWSKIKKSATDWIKENLEAMGGGDLVGGILDPDKINYHYGRTAAYTAATGRPFHEGVDFPFVYQEVRTPMGGRLTRMPFMSGGYGNYVKITSGVIDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPYLRNAKKKGRLSIGGGGATSGSGATYASRVIRQAQSILGGRYKGKWIHDQMMRVAKRESNYQSNAVNNWDINAQRGDPSRGLFQIIGSTFRANAKRGYTNYNNPVHQGISAMQYIVRRYGWGGFKRAGDYAYATGGKVFDGWYNLGEDGHPEWIIPTDPARRNDAMKILHYAAAEVRGKKASKNKRPSQLSDLNGFDDPSLLLKMIEQQQQQIALLLKIAQSNDVIADKDYQPIIDEYAFDKKVNASIEKRERQESTKVKFRKGGIAIQ

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]