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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS09085 [old locus tag: NWMN_1619 ]
  • pan locus tag?: SAUPAN004385000
  • symbol: NWMN_RS09085
  • pan gene symbol?: ptaA
  • synonym:
  • product: PTS glucose transporter subunit IIBC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS09085 [old locus tag: NWMN_1619 ]
  • symbol: NWMN_RS09085
  • product: PTS glucose transporter subunit IIBC
  • replicon: chromosome
  • strand: -
  • coordinates: 1797716..1799182
  • length: 1467
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1797716..1799182) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1619

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGTATAAATTTTTCCAAAATTTAGGGCGTTCGTTAATGTTACCAGTTGCCATTTTACCG
    GCTGCAGCAATTATTGCCGGAATTGGTAATACGTTAAATGCACTTCATGCGACGCCGAAA
    ATCGCAATGTTCTTTACTACGGTAGGTACTACGATTTTAGAGCAATTAGGTATTTTATTT
    GCAATTGGTGTAGCTATAGGAATGGCAAAGAAAAATGATGGTGCAGTCGCGCTTGCAGCT
    ACGTTAGGATATTTTTTAGTTACAGTTGTATTATCACCAATGAAATTAGCGCCTTTATTA
    GGAATGAAAGCTTCGGAAATAAATTCAGCTTTTGAAAAGATGAATAATGGCAATGTCTTT
    GTTGGTATTGTAATAGGTTTAATAGCAGCTTATGCATACAATAAGTTTAGTGAAACAGAA
    TTACCATTAGCATTATCATTTTTTAGTGGTAAACGTCTAGTTCCAATTATGACTGCATTT
    TACTGTACATTTTTAGTTGTCATATTGTTATTCTTATGGCCACTACTTTATTCATGGATT
    GTAAAATTTGGTGAATCTATAGTCGGTTTAGGATCGTTTGGAGCTTTCATATATGGTGTT
    GCCAATAGATTATTAATTCCTACAGGATTACATCATGCACTGAATAGTGTGTTCTGGTTT
    GATACGATTGGTATTAATGATATTGGTAAATTCCAAAGTGGCAAAGATGCTATAAAAGGT
    ATTACAGGACGCTATCAAGCGGGATTCTTCCCAATCATGATGTTCGGTATTCCAGCGGCT
    GCGTTAGCAATGTATCATACAGCTAAAACTACTCAGAAAAAACAAGTTTACGGTTGGTTC
    CTAGCGAGTTCAGTTGCAGCATTTTTCGTTGGTGTTACAGAGCCGATTGAGTTTGCATTT
    ATGTTTGTTGCGCCAATCTTATATGTTGTTCATGCGTTATTAACAGGATTATCTTTATTT
    ATCGCAGCTACATTCCATTGGACAGCTGGATTTTCATTTAGTGCAGGTTTGATAGATTAT
    GTGTTATCACTAATTAATCCAGTATCAAATCATCCATTGATGTTGCTTGTTCAAGGTGTT
    GTATTTTTCATCTTATACTATGTGATTTTCCGTGTAGTAATCCAAGTATTTAACTTGAAT
    ACGATTGGTAGAGGTGAAAATGAATTAGTTGACCCAACAGTTGTAAAAGATAATATTGCT
    CCTGGTGAAAATGATATTAAACAAAGTAAATATCATCAACATGCTATACAAATATTAGAA
    GGTTTAGGCGGTCAAGAGAATATTGTTAATTTAACCAATTGTGCAACAAGGTTGCGTCTA
    GAGTTAAAAGACACATCTATTATTGATAAACAGAAGATTAAAAACGCCGGTGCAGTTGGT
    GTTACTGTTAATGGCAAACATTCAACTCAAGTTATTGTCGGTACACACGTACAGCAGGTT
    GCTGATGAAATTGAAAAACATTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1467

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS09085 [old locus tag: NWMN_1619 ]
  • symbol: NWMN_RS09085
  • description: PTS glucose transporter subunit IIBC
  • length: 488
  • theoretical pI: 9.38912
  • theoretical MW: 53086.2
  • GRAVY: 0.625205

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, N-acetylglucosamine-specific IIBC component (TIGR01998; EC 2.7.1.69; HMM-score: 714.1)
    and 11 more
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, glucose-specific IIBC component (TIGR02002; EC 2.7.1.69; HMM-score: 381.1)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, maltose and glucose-specific IIBC component (TIGR02004; EC 2.7.1.69; HMM-score: 292.4)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, alpha-glucoside-specific IIBC component (TIGR02005; EC 2.7.1.69; HMM-score: 231.2)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, IIBC component (TIGR02003; EC 2.7.1.69; HMM-score: 196.7)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, maltose and glucose-specific subfamily, IIC component (TIGR00852; HMM-score: 176.1)
    Signal transduction Signal transduction PTS PTS system, maltose and glucose-specific subfamily, IIC component (TIGR00852; HMM-score: 176.1)
    PTS system, sucrose-specific IIBC component (TIGR01996; EC 2.7.1.69; HMM-score: 58)
    PTS system, beta-glucoside-specific IIABC component (TIGR01995; EC 2.7.1.69; HMM-score: 56.1)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, glucose-like IIB component (TIGR00826; EC 2.7.1.69; HMM-score: 46.2)
    Signal transduction Signal transduction PTS PTS system, glucose-like IIB component (TIGR00826; EC 2.7.1.69; HMM-score: 46.2)
    PTS system, trehalose-specific IIBC component (TIGR01992; EC 2.7.1.69; HMM-score: 44.7)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    PTS_EIIC (CL0493) PTS_EIIC; Phosphotransferase system, EIIC (PF02378; HMM-score: 233.1)
    and 3 more
    no clan defined PTS_EIIB; phosphotransferase system, EIIB (PF00367; HMM-score: 57.2)
    Oxa1 (CL0376) 60KD_IMP; 60Kd inner membrane protein (PF02096; HMM-score: 10.8)
    no clan defined SH; Viral small hydrophobic protein (PF01445; HMM-score: 8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 11
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.213941
    • TAT(Tat/SPI): 0.014522
    • LIPO(Sec/SPII): 0.102848
  • predicted transmembrane helices (TMHMM): 11

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYKFFQNLGRSLMLPVAILPAAAIIAGIGNTLNALHATPKIAMFFTTVGTTILEQLGILFAIGVAIGMAKKNDGAVALAATLGYFLVTVVLSPMKLAPLLGMKASEINSAFEKMNNGNVFVGIVIGLIAAYAYNKFSETELPLALSFFSGKRLVPIMTAFYCTFLVVILLFLWPLLYSWIVKFGESIVGLGSFGAFIYGVANRLLIPTGLHHALNSVFWFDTIGINDIGKFQSGKDAIKGITGRYQAGFFPIMMFGIPAAALAMYHTAKTTQKKQVYGWFLASSVAAFFVGVTEPIEFAFMFVAPILYVVHALLTGLSLFIAATFHWTAGFSFSAGLIDYVLSLINPVSNHPLMLLVQGVVFFILYYVIFRVVIQVFNLNTIGRGENELVDPTVVKDNIAPGENDIKQSKYHQHAIQILEGLGGQENIVNLTNCATRLRLELKDTSIIDKQKIKNAGAVGVTVNGKHSTQVIVGTHVQQVADEIEKHL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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