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m (Text replacement - "gene Genbank" to "gene RefSeq") |
m (Text replacement - "* <aureodatabase>protein Genbank</aureodatabase> " to "") |
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__TOC__ | |||
<protect> | <protect> | ||
<aureodatabase> | <aureodatabase>annotation</aureodatabase> | ||
=Summary= | =Summary= | ||
* <aureodatabase>organism</aureodatabase> | *<aureodatabase>organism</aureodatabase> | ||
* <aureodatabase>locus</aureodatabase> | *<aureodatabase>locus</aureodatabase> | ||
* <aureodatabase>pan locus</aureodatabase> | *<aureodatabase>pan locus</aureodatabase> | ||
* <aureodatabase>gene symbol</aureodatabase> | *<aureodatabase>gene symbol</aureodatabase> | ||
* <aureodatabase>pan gene symbol</aureodatabase> | *<aureodatabase>pan gene symbol</aureodatabase> | ||
* <aureodatabase>gene synonyms</aureodatabase> | *<aureodatabase>gene synonyms</aureodatabase> | ||
* <aureodatabase>product</aureodatabase> | *<aureodatabase>product</aureodatabase> | ||
</protect> | </protect> | ||
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==General== | ==General== | ||
* <aureodatabase>gene type</aureodatabase> | *<aureodatabase>gene type</aureodatabase> | ||
* <aureodatabase>locus</aureodatabase> | *<aureodatabase>locus</aureodatabase> | ||
* <aureodatabase>gene symbol</aureodatabase> | *<aureodatabase>gene symbol</aureodatabase> | ||
* <aureodatabase>product</aureodatabase> | *<aureodatabase>product</aureodatabase> | ||
* <aureodatabase>gene replicon</aureodatabase> | *<aureodatabase>gene replicon</aureodatabase> | ||
* <aureodatabase>strand</aureodatabase> | *<aureodatabase>strand</aureodatabase> | ||
* <aureodatabase>gene coordinates</aureodatabase> | *<aureodatabase>gene coordinates</aureodatabase> | ||
* <aureodatabase>gene length</aureodatabase> | *<aureodatabase>gene length</aureodatabase> | ||
* <aureodatabase>essential</aureodatabase> | *<aureodatabase>essential</aureodatabase> | ||
*<aureodatabase>gene comment</aureodatabase> | |||
</protect> | </protect> | ||
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==Accession numbers== | ==Accession numbers== | ||
* <aureodatabase>gene | *<aureodatabase>gene location</aureodatabase> | ||
* <aureodatabase>gene | *<aureodatabase>gene BioCyc</aureodatabase> | ||
*<aureodatabase>gene MicrobesOnline</aureodatabase> | |||
</protect> | </protect> | ||
<protect> | <protect> | ||
==Phenotype== | ==Phenotype== | ||
</protect> | </protect> | ||
Share your knowledge and add information here. [<span class="plainlinks">[//aureowiki.med.uni-greifswald.de/index.php?title={{PAGENAMEE}}&veaction=edit§ion=6 edit]</span>] | |||
<protect> | <protect> | ||
==DNA sequence== | ==DNA sequence== | ||
* <aureodatabase>gene sequence</aureodatabase> | *<aureodatabase>gene sequence</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
<aureodatabase>RNA regulated operons</aureodatabase> | |||
</protect> | |||
<protect> | |||
=Protein= | =Protein= | ||
<aureodatabase>protein 3D view</aureodatabase> | <aureodatabase>protein 3D view</aureodatabase> | ||
==General== | ==General== | ||
* <aureodatabase>locus</aureodatabase> | *<aureodatabase>locus</aureodatabase> | ||
* <aureodatabase>protein symbol</aureodatabase> | *<aureodatabase>protein symbol</aureodatabase> | ||
* <aureodatabase>protein description</aureodatabase> | *<aureodatabase>protein description</aureodatabase> | ||
* <aureodatabase>protein length</aureodatabase> | *<aureodatabase>protein length</aureodatabase> | ||
* <aureodatabase>theoretical pI</aureodatabase> | *<aureodatabase>theoretical pI</aureodatabase> | ||
* <aureodatabase>theoretical MW</aureodatabase> | *<aureodatabase>theoretical MW</aureodatabase> | ||
* <aureodatabase>GRAVY</aureodatabase> | *<aureodatabase>GRAVY</aureodatabase> | ||
</protect> | </protect> | ||
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==Function== | ==Function== | ||
* <aureodatabase>protein reaction</aureodatabase> | *<aureodatabase>protein reaction</aureodatabase> | ||
* <aureodatabase>protein TIGRFAM</aureodatabase> | *<aureodatabase>protein TIGRFAM</aureodatabase> | ||
* <aureodatabase>protein TheSeed</aureodatabase> | *<aureodatabase>protein TheSeed</aureodatabase> | ||
* <aureodatabase>protein PFAM</aureodatabase> | *<aureodatabase>protein PFAM</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
==Structure, modifications & | ==Structure, modifications & cofactors== | ||
* <aureodatabase>protein domains</aureodatabase> | *<aureodatabase>protein domains</aureodatabase> | ||
* <aureodatabase>protein modifications</aureodatabase> | *<aureodatabase>protein modifications</aureodatabase> | ||
* <aureodatabase>protein cofactors</aureodatabase> | *<aureodatabase>protein cofactors</aureodatabase> | ||
* <aureodatabase>protein effectors</aureodatabase> | *<aureodatabase>protein effectors</aureodatabase> | ||
* <aureodatabase>protein | *<aureodatabase>protein regulated operons</aureodatabase> | ||
</protect> | </protect> | ||
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==Localization== | ==Localization== | ||
* <aureodatabase>protein Psortb</aureodatabase> | *<aureodatabase>protein Psortb</aureodatabase> | ||
* <aureodatabase>protein LocateP</aureodatabase> | *<aureodatabase>protein LocateP</aureodatabase> | ||
* <aureodatabase>protein SignalP</aureodatabase> | *<aureodatabase>protein SignalP</aureodatabase> | ||
* <aureodatabase>protein TMHMM</aureodatabase> | *<aureodatabase>protein TMHMM</aureodatabase> | ||
</protect> | </protect> | ||
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==Accession numbers== | ==Accession numbers== | ||
* <aureodatabase>protein GI</aureodatabase> | *<aureodatabase>protein GI</aureodatabase> | ||
* <aureodatabase>protein | *<aureodatabase>protein RefSeq</aureodatabase> | ||
* <aureodatabase>protein | *<aureodatabase>protein UniProt</aureodatabase> | ||
</protect> | </protect> | ||
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==Protein sequence== | ==Protein sequence== | ||
* <aureodatabase>protein sequence</aureodatabase> | *<aureodatabase>protein sequence</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
== | ==Experimental data== | ||
* <aureodatabase>protein validated peptides</aureodatabase> | *<aureodatabase>protein validated peptides</aureodatabase> | ||
*<aureodatabase>protein validated localization</aureodatabase> | |||
*<aureodatabase>protein validated quantitative data</aureodatabase> | |||
*<aureodatabase>protein partners</aureodatabase> | |||
</protect> | </protect> | ||
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==Operon== | ==Operon== | ||
* <aureodatabase>operons</aureodatabase> | *<aureodatabase>operons</aureodatabase> | ||
</protect> | </protect> | ||
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==Regulation== | ==Regulation== | ||
*<aureodatabase>regulators</aureodatabase> | |||
* <aureodatabase>regulators</aureodatabase> | |||
</protect> | </protect> | ||
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==Transcription pattern== | ==Transcription pattern== | ||
* <aureodatabase>expression browser</aureodatabase> | *<aureodatabase>expression browser</aureodatabase> | ||
</protect> | </protect> | ||
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==Protein synthesis (provided by Aureolib)== | ==Protein synthesis (provided by Aureolib)== | ||
* <aureodatabase>protein synthesis Aureolib</aureodatabase> | *<aureodatabase>protein synthesis Aureolib</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
== | ==Protein stability== | ||
* <aureodatabase>protein half-life</aureodatabase> | *<aureodatabase>protein half-life</aureodatabase> | ||
</protect> | </protect> | ||
Latest revision as of 05:27, 11 March 2016
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS07735 [old locus tag: NWMN_1374 ]
- pan locus tag?: SAUPAN003923000
- symbol: NWMN_RS07735
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS07735 [old locus tag: NWMN_1374 ]
- symbol: NWMN_RS07735
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1539606..1540709
- length: 1104
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
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361
421
481
541
601
661
721
781
841
901
961
1021
1081ATGCCACAAGGTTTGGAAGTATTCCGCGTGTTATATCACAAATATCCAGACGAAAGTGAA
TTGCTGATTTATTTTATTGAAGGTTTAATGTCTGAAAATCAAACTGACGAAGCGTTAGAA
TATTTAAGTTATGTTGAACCATCACCTGAAAAGTTGATGTTAGAAGCAGATTTATATCAA
CAAATTAATATGATGGAAGTTGCTATTGATAAATTACAAGAAGCACTTGAACTAGAGCCA
AATGATCCAATAATCCATTTTGCATTGGCTGAAATGTTATATTATGATGGTCAATATTTA
CGTGCTACCTCTGAATACGAAACCGTTTTAGAAACTGGTGAATATCAAGTTAATGGTGTA
AACTTATTCTCTCGTATGGCAGATTGTAGTTTACAAAGTGGTAACTATAGTGATGCGATT
CGCTTATACGATGAAATTAATGAAGATGAAATGACTTCAGAAGATTATCTCAAAAAAGCC
ATTTCTTACGATAAAAATGACATCACTCAAGAAGCAATTAAAATAATGACTACATTACTT
TCTAAAGATCCTGATTATATTCAAGGCTACTTGTATTTACAATCATTATATGAAAATGAA
AAAAATTATCCAGATGCCATTGAAACGGGTAAAGAAGGATTACGACTAAGTCAATTTTAT
AAAGAGTTAATGTATACAACTGGATGTTTGGAAATAGAACACGGCGATGCTAATGAAGGT
GTATTATTGTTAAAACAAGCATTAGAGGTTGATAATGCTTACCAAGAACCTTTATTGATT
TTAAGCGATTTATATCGTAATGAAGAAGATTATGAAGCAATCATTGAATTATTAACATAT
GTAGATGAAGAAGATTTGGATCCTACATTCATGTGGCATTTAGCGTTCGCCTATGGTCAA
GAAGAGCGAGATAAAGAAGCTCAACATTTCTTTGAATTAGCATATCCAACGATGAAAACA
AATATTGATTTTATGAGTGATTATTATTTCTATTTAATTGAAATTGGTCAAAAGGAACAA
GCAATTACTATTTTAAATCAATTGTTGGAACTAGAGCCAAGTAACGAAAATTGGCATGAC
GAATTATCAAGATTGCAATCTTAA60
120
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1104
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS07735 [old locus tag: NWMN_1374 ]
- symbol: NWMN_RS07735
- description: hypothetical protein
- length: 367
- theoretical pI: 3.81747
- theoretical MW: 43020.7
- GRAVY: -0.46921
⊟Function[edit | edit source]
- TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein (TIGR02917; HMM-score: 73.4)and 7 moretype IV pilus biogenesis/stability protein PilW (TIGR02521; HMM-score: 46.3)type III secretion low calcium response chaperone LcrH/SycD (TIGR02552; HMM-score: 34.5)poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA (TIGR03939; HMM-score: 20.5)Unknown function General heme biosynthesis-associated TPR protein (TIGR00540; HMM-score: 19.6)tol-pal system protein YbgF (TIGR02795; HMM-score: 19.1)pentatricopeptide repeat domain (TIGR00756; HMM-score: 13.7)FimV C-terminal domain (TIGR03504; HMM-score: 11.9)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: TPR (CL0020) TPR_19; Tetratricopeptide repeat (PF14559; HMM-score: 78.9)TPR_2; Tetratricopeptide repeat (PF07719; HMM-score: 67.1)and 19 moreTPR_14; Tetratricopeptide repeat (PF13428; HMM-score: 41.1)TPR_16; Tetratricopeptide repeat (PF13432; HMM-score: 36.2)TPR_7; Tetratricopeptide repeat (PF13176; HMM-score: 34.2)TPR_11; TPR repeat (PF13414; HMM-score: 33.1)TPR_6; Tetratricopeptide repeat (PF13174; HMM-score: 32.4)TPR_15; Tetratricopeptide repeat (PF13429; HMM-score: 31.5)TPR_12; Tetratricopeptide repeat (PF13424; HMM-score: 28.9)ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3 (PF12895; HMM-score: 26.2)TPR_8; Tetratricopeptide repeat (PF13181; HMM-score: 26.2)BTAD; Bacterial transcriptional activator domain (PF03704; HMM-score: 24.7)TPR_20; Tetratricopeptide repeat (PF14561; HMM-score: 22.2)TPR_9; Tetratricopeptide repeat (PF13371; HMM-score: 20.9)TPR_1; Tetratricopeptide repeat (PF00515; HMM-score: 20.1)TPR_17; Tetratricopeptide repeat (PF13431; HMM-score: 19)SGNH_hydrolase (CL0264) DUF4886; Domain of unknown function (DUF4886) (PF16227; HMM-score: 16.3)TPR (CL0020) SNAP; Soluble NSF attachment protein, SNAP (PF14938; HMM-score: 15.4)no clan defined MIT; MIT (microtubule interacting and transport) domain (PF04212; HMM-score: 14)TPR (CL0020) PPR; PPR repeat (PF01535; HMM-score: 13.9)CuAO_N2_N3 (CL0047) DUF1965; Domain of unknown function (DUF1965) (PF09248; HMM-score: 11.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00145
- TAT(Tat/SPI): 0.000074
- LIPO(Sec/SPII): 0.00016
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSYVEPSPEKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEYQVNGVNLFSRMADCSLQSGNYSDAIRLYDEINEDEMTSEDYLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPTFMWHLAFAYGQEERDKEAQHFFELAYPTMKTNIDFMSDYYFYLIEIGQKEQAITILNQLLELEPSNENWHDELSRLQS
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: CodY see NWMN_1374
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.