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Revision as of 18:37, 10 March 2016 by AureoSysAdmin (talk | contribs) (Text replacement - "gene Genbank" to "gene RefSeq")
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NCBI date : _

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1673 [new locus tag: NWMN_RS09390 ]
  • pan locus tag?: SAUPAN004480000
  • symbol: NWMN_1673
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1673 [new locus tag: NWMN_RS09390 ]
  • symbol: NWMN_1673
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1868974..1869276
  • length: 303
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID: 5330990 NCBI
  • RefSeq: YP_001332707 NCBI

⊟Phenotype[edit | edit source]

  • Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTCTCGTTCAAAAAAATACTTTTACTTATCTAGCTTAATGATTATTTTAAGCTTTTTC
    TTTAATACAAATAACGTTTTCCTAAGTGGACTTTTTAATTCTTTTATTAAATTAATACTT
    TTCTGCAGTGTTATTAACTCAATTGTACTAATTTTGTCTATAATTTTTGCAGATCGTTCA
    ATTAAATCACTAAAGCCTGATGCAGATTGGATTAGAATTGCGAGTAAAAGTTTGCCTTGG
    ATTATTCTAATTGTTATTTTAGTACATATCTTTTCAATTGTTCGTACATTCGGTTTTATT
    TAA
    60
    120
    180
    240
    300
    303

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1673 [new locus tag: NWMN_RS09390 ]
  • symbol: NWMN_1673
  • description: hypothetical protein
  • length: 100
  • theoretical pI: 10.8622
  • theoretical MW: 11540.9
  • GRAVY: 1.11

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Adaptations to atypical conditions phage shock protein G (TIGR02975; HMM-score: 8.9)
  • TheSEED: data available for N315, NCTC8325
  • PFAM:
    no clan defined Phageshock_PspG; Phage shock protein G (Phageshock_PspG) (PF09583; HMM-score: 12)

⊟Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • interaction partners:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.017016
    • TAT(Tat/SPI): 0.0003
    • LIPO(Sec/SPII): 0.010653
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

  • GI: 151221885 NCBI
  • UniProt: A0A0H3KH75 UniProt
  • protein Genbank : _
  • RefSeq: YP_001332707 NCBI

⊟Protein sequence[edit | edit source]

  • MSRSKKYFYLSSLMIILSFFFNTNNVFLSGLFNSFIKLILFCSVINSIVLILSIIFADRSIKSLKPDADWIRIASKSLPWIILIVILVHIFSIVRTFGFI

⊟Peptides[edit | edit source]

  • experimentally validated: data available for NCTC8325

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • sigma factors : _
  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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