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m (Text replacement - "* <aureodatabase>protein Genbank</aureodatabase> " to "") |
m (Text replacement - "gene Genbank" to "gene RefSeq") |
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__TOC__ | |||
<protect> | <protect> | ||
<aureodatabase> | <aureodatabase>annotation</aureodatabase> | ||
=Summary= | =Summary= | ||
* <aureodatabase>organism</aureodatabase> | *<aureodatabase>organism</aureodatabase> | ||
* <aureodatabase>locus</aureodatabase> | *<aureodatabase>locus</aureodatabase> | ||
* <aureodatabase>pan locus</aureodatabase> | *<aureodatabase>pan locus</aureodatabase> | ||
* <aureodatabase>gene symbol</aureodatabase> | *<aureodatabase>gene symbol</aureodatabase> | ||
* <aureodatabase>pan gene symbol</aureodatabase> | *<aureodatabase>pan gene symbol</aureodatabase> | ||
* <aureodatabase>gene synonyms</aureodatabase> | *<aureodatabase>gene synonyms</aureodatabase> | ||
* <aureodatabase>product</aureodatabase> | *<aureodatabase>product</aureodatabase> | ||
</protect> | </protect> | ||
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==General== | ==General== | ||
* <aureodatabase>gene type</aureodatabase> | *<aureodatabase>gene type</aureodatabase> | ||
* <aureodatabase>locus</aureodatabase> | *<aureodatabase>locus</aureodatabase> | ||
* <aureodatabase>gene symbol</aureodatabase> | *<aureodatabase>gene symbol</aureodatabase> | ||
* <aureodatabase>product</aureodatabase> | *<aureodatabase>product</aureodatabase> | ||
* <aureodatabase>gene replicon</aureodatabase> | *<aureodatabase>gene replicon</aureodatabase> | ||
* <aureodatabase>strand</aureodatabase> | *<aureodatabase>strand</aureodatabase> | ||
* <aureodatabase>gene coordinates</aureodatabase> | *<aureodatabase>gene coordinates</aureodatabase> | ||
* <aureodatabase>gene length</aureodatabase> | *<aureodatabase>gene length</aureodatabase> | ||
* <aureodatabase>essential</aureodatabase> | *<aureodatabase>essential</aureodatabase> | ||
*<aureodatabase>gene comment</aureodatabase> | |||
</protect> | </protect> | ||
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==Accession numbers== | ==Accession numbers== | ||
* <aureodatabase>gene GI</aureodatabase> | *<aureodatabase>gene GI</aureodatabase> | ||
* <aureodatabase>gene | *<aureodatabase>gene RefSeq</aureodatabase> | ||
*<aureodatabase>gene BioCyc</aureodatabase> | |||
*<aureodatabase>gene MicrobesOnline</aureodatabase> | |||
</protect> | </protect> | ||
<protect> | <protect> | ||
==Phenotype== | ==Phenotype== | ||
</protect> | </protect> | ||
Share your knowledge and add information here. [<span class="plainlinks">[//aureowiki.med.uni-greifswald.de/index.php?title={{PAGENAMEE}}&veaction=edit§ion=6 edit]</span>] | |||
<protect> | <protect> | ||
==DNA sequence== | ==DNA sequence== | ||
* <aureodatabase>gene sequence</aureodatabase> | *<aureodatabase>gene sequence</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
<aureodatabase>RNA regulated operons</aureodatabase> | |||
</protect> | |||
<protect> | |||
=Protein= | =Protein= | ||
<aureodatabase>protein 3D view</aureodatabase> | <aureodatabase>protein 3D view</aureodatabase> | ||
==General== | ==General== | ||
* <aureodatabase>locus</aureodatabase> | *<aureodatabase>locus</aureodatabase> | ||
* <aureodatabase>protein symbol</aureodatabase> | *<aureodatabase>protein symbol</aureodatabase> | ||
* <aureodatabase>protein description</aureodatabase> | *<aureodatabase>protein description</aureodatabase> | ||
* <aureodatabase>protein length</aureodatabase> | *<aureodatabase>protein length</aureodatabase> | ||
* <aureodatabase>theoretical pI</aureodatabase> | *<aureodatabase>theoretical pI</aureodatabase> | ||
* <aureodatabase>theoretical MW</aureodatabase> | *<aureodatabase>theoretical MW</aureodatabase> | ||
* <aureodatabase>GRAVY</aureodatabase> | *<aureodatabase>GRAVY</aureodatabase> | ||
</protect> | </protect> | ||
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==Function== | ==Function== | ||
* <aureodatabase>protein reaction</aureodatabase> | *<aureodatabase>protein reaction</aureodatabase> | ||
* <aureodatabase>protein TIGRFAM</aureodatabase> | *<aureodatabase>protein TIGRFAM</aureodatabase> | ||
* <aureodatabase>protein TheSeed</aureodatabase> | *<aureodatabase>protein TheSeed</aureodatabase> | ||
* <aureodatabase>protein PFAM</aureodatabase> | *<aureodatabase>protein PFAM</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
==Structure, modifications & | ==Structure, modifications & cofactors== | ||
* <aureodatabase>protein domains</aureodatabase> | *<aureodatabase>protein domains</aureodatabase> | ||
* <aureodatabase>protein modifications</aureodatabase> | *<aureodatabase>protein modifications</aureodatabase> | ||
* <aureodatabase>protein cofactors</aureodatabase> | *<aureodatabase>protein cofactors</aureodatabase> | ||
* <aureodatabase>protein effectors</aureodatabase> | *<aureodatabase>protein effectors</aureodatabase> | ||
* <aureodatabase>protein | *<aureodatabase>protein regulated operons</aureodatabase> | ||
</protect> | </protect> | ||
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==Localization== | ==Localization== | ||
* <aureodatabase>protein Psortb</aureodatabase> | *<aureodatabase>protein Psortb</aureodatabase> | ||
* <aureodatabase>protein LocateP</aureodatabase> | *<aureodatabase>protein LocateP</aureodatabase> | ||
* <aureodatabase>protein SignalP</aureodatabase> | *<aureodatabase>protein SignalP</aureodatabase> | ||
* <aureodatabase>protein TMHMM</aureodatabase> | *<aureodatabase>protein TMHMM</aureodatabase> | ||
</protect> | </protect> | ||
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==Accession numbers== | ==Accession numbers== | ||
* <aureodatabase>protein GI</aureodatabase> | *<aureodatabase>protein GI</aureodatabase> | ||
* <aureodatabase>protein | *<aureodatabase>protein RefSeq</aureodatabase> | ||
* <aureodatabase>protein | *<aureodatabase>protein UniProt</aureodatabase> | ||
</protect> | </protect> | ||
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==Protein sequence== | ==Protein sequence== | ||
* <aureodatabase>protein sequence</aureodatabase> | *<aureodatabase>protein sequence</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
== | ==Experimental data== | ||
* <aureodatabase>protein validated peptides</aureodatabase> | *<aureodatabase>protein validated peptides</aureodatabase> | ||
*<aureodatabase>protein validated localization</aureodatabase> | |||
*<aureodatabase>protein validated quantitative data</aureodatabase> | |||
*<aureodatabase>protein partners</aureodatabase> | |||
</protect> | </protect> | ||
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==Operon== | ==Operon== | ||
* <aureodatabase>operons</aureodatabase> | *<aureodatabase>operons</aureodatabase> | ||
</protect> | </protect> | ||
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==Regulation== | ==Regulation== | ||
*<aureodatabase>regulators</aureodatabase> | |||
* <aureodatabase>regulators</aureodatabase> | |||
</protect> | </protect> | ||
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==Transcription pattern== | ==Transcription pattern== | ||
* <aureodatabase>expression browser</aureodatabase> | *<aureodatabase>expression browser</aureodatabase> | ||
</protect> | </protect> | ||
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==Protein synthesis (provided by Aureolib)== | ==Protein synthesis (provided by Aureolib)== | ||
* <aureodatabase>protein synthesis Aureolib</aureodatabase> | *<aureodatabase>protein synthesis Aureolib</aureodatabase> | ||
</protect> | </protect> | ||
<protect> | <protect> | ||
== | ==Protein stability== | ||
* <aureodatabase>protein half-life</aureodatabase> | *<aureodatabase>protein half-life</aureodatabase> | ||
</protect> | </protect> | ||
Latest revision as of 18:01, 10 March 2016
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1351 [new locus tag: NWMN_RS07620 ]
- pan locus tag?: SAUPAN003895000
- symbol: NWMN_1351
- pan gene symbol?: dynA
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1351 [new locus tag: NWMN_RS07620 ]
- symbol: NWMN_1351
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1514468..1517908
- length: 3441
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5330800 NCBI
- RefSeq: YP_001332385 NCBI
- BioCyc:
- MicrobesOnline: 3706903 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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3421ATGATTAATAAAGAACAATTAGATCTTTTATATAAATTAAAAAAAGAAGTTGAAAAGTCG
CGAAATGAAGCACTTTTACATACAATTAACCAAGTAATTAAGAAAGTATATTTGCAGCAA
TATACATGTTCGTTCGTTGGACATTTTTCTGCAGGTAAATCGACACTGATAAATTTATTA
ATTGAACAAGATATCTTACCAAGTTCACCTGTACCAACGACAAGTAATACTGCTATTGTG
TCAGTTTCAGACAATCACGATATTATTGCTAATTTGCCGAATCAAACGTATGCCAAATTA
TCTAATTATGATGAAGTAAGGGAAATGAATCGCCAAAATGTCGACGTTGAATCTGTAGAA
ATTAATTTTCAATCAGCTAAATTTGAAAATGGGTTTACGTTGCAAGATACACCAGGTGTT
GATTCAAATGTTGCATCACATCAGTCAATAACAGAACAATATATGTATACAAGTAATATG
ATATTTTATACGGTTGACTATAACCACGTTCAATCTGAACTTAACTTTAAGTTTATGAAG
CATATAAATGATGTTGGAATACCTGTTGTGTTTATCATTAATCAAATTGACAAGCATCAA
GACGATGAATTGTCATTCTCTACGTTTAAATCTCGAGTTGAAAAATCAATTGCAGATTGG
GGTATTAAATTAGAACGCACCTTTTATGTATCTAAATTTGATCACCCTGAAAATGAACTT
GAAGTATTATCAAGTTATCTAATTTCATTAGATCAACATAGAGAGACAATAGAGGATTAT
ACATCAAGAACGGTTGAATACATTACCGAAGCTCAGCTAGATTACATTCAGTCTGAAATT
CAGGAAGTACTAGAAGATTTAGGTATCGAAGAAGCGGAGTTTGAACAAGCATTTTTAAAT
AGTCAACAACATCAAGCAATTAGTGAAGAGGCACAACTTTTAAATAATCCAGATGAATTA
ATGGCATTTTTAAAGAATAAGCGTAAAAATATTTTAGAAAATGCATACATTATGCCGCAT
AATATGAGAGAAATGTTACGAAGTTATTTGGAAAGTATGTCTCAAGACTTTAATGTTGGC
GGATTTTTTAATAAAAAGAAGAAAAAACTACAAATTCAACAACAGCGATTATTAACAGCG
ACAGATGCGTTACAAGAACATGTTAATCAACAAATTCGTCAACCAATGCGAGAAGATATG
TCATTTGTTACGCGTTTTATCAATAAAAAAGAAGCTTCAGATAAAGTATTAAATCAGCAT
TATGACGTTAAGCCAGAAATGATTGAAGGTTTATATCAACCACAAACATCAATCAGCAAT
ACTTATGTACTTACATTTTCAGACGAAGTGGTTAAAGCCATTAAGAAATATGTTGAACAA
CAATCAACACCAATTTTTAAAGAAATAATAGAAAATGTGCAGGCAGATGAATTACCAACA
GAAGAAAGTGATGATTTAAAAGAATATCAACGTTATACAGAATTAAATGAGCTGCGTCAG
TCATTGACGACTAAGAATTATCGTCACTACTATATTCATTTAGATGAATCTCTAGATAAA
TTAATAGGTCGACAAGAGACAACATATCAAGTGGCTACTGATAATGCTCAGGATAATCGT
GATAATCAGCAGCTAAATCAAAATACAGCTACAACAAATATGTCTATAGATATTCAAAAA
GCGCTTGATATAATTTCGGATGTGCCTTTGTTCAAGCGTACAAAGCAAGATATCCACGAA
ACATTAACACGTATAGATAATAAATTAATAAAAATAGGTGTATTTGGAACATTTAGTGCT
GGTAAAAGTAGTTTGATAAATGCATTATTAGGCGAGCATATTTTAGTCAGTTCTCCAAAT
CCTACTACAGCAGCTACTACAGAAATATCTTATGGAGACGAGAGTTATATAACGCTAAAA
TCACAATCGCAATTATTAGATGAAATTAATGCAGTAGTTGAATACCAAGATATGTCTTAT
TCGACTATAGAAGACTTTATTAATTCAGATTTAGAAAAGTTAAAATCACATTTAAATAAA
AATCAACTCGCTTTTATTCAGGCAGTTGAAAAACATTATAAATTGTATGTCAATATGTTG
GAAAATGGAGAAAAACATGCCATTAATCAACAGGAATTGAAAAAGTGGAGTGCAGAAGAT
GAATATGCAACATTTGTTAAGACAGTACACATTGCATTAATGCATGATTGGTTAAAAGGT
AAAATAATTGTTGATTCATTAGGGCTACACTCAAATAACCAAAGGCATACAAATGAAACC
GAACAAATTTTAACTTCTTCAGACTTAATATTGTATGTAAGTTATTTTAATCATTCATTT
ACTGATAATGACAAAGCGTTTATAGAACACATGAAAGATATGAACCAGTTGAATGAAAAC
CAAGCATTTAAAATGGTAATTAATGCTGCTGATTTAGCAGAAAGTCAAGATGATCTTGAA
GCAGTTGAAACATATGTATCAGATGCATTAAGACAAGTACACTTACAATCAGACATTTTT
GCTGTATCAAGTCGAAATGCATTGCAAGCTGAAGATAAGGGCATTGATCAATTAAAACAA
AGCATACAACAATTTGTTGATGTTGAATCTAAATCAATTTTAGAACAACAAATGATTCAT
CAGCTTCAACAAATGGATCGTTCTTATGTAGAGATGATTACAGAATTTGAAACAAATAAA
GCTGATATTTCACGTCGCCAACAAAGGTTAACAGATTATAAAGATAAACAGCGTTTACAA
CATCAATTAATTGATGCGACGTTACAACATACAGACAACGAAGTTGAAGAACAAGTTTAT
CATTTAAATGCCCGTTTAAAACTACAACTACTTGACGATGTTAAATCAGTGTTTAATTCT
CAAATGACGCAAAATAGTGATTTTAATGAAGAAAAGAAAGTGTCTACGAGAGTATACTTA
GATCAAATTCATCAACGATTGTTTTTAGAGCAATCTTTAATTACAGAACGTATAAAAAAA
TACTTTAATAAGCAACTCACTGAGCAAATTGCACCAATCGTTCAACAATTAGCAGATTTA
CATGTCATTATTAATCCTCAGTTTAACTTTGAATCAGCTAATATAGAGCAACCATTATTG
CACATCGATTTCAACGATATGCTAAATGCATTGCCTAAACAATTAACAAAACGTAAAATT
TTGAATCCAAATGGGCAAAGAGATATACATGAATCAATTTGTCAAAGTACGTTAGGATTA
TTACAACCACAAATGGGATTATTGAGGCAACAGCTTGAATTATATGTAAAGCAAATGGCT
GTAGAAGCTGAATCGCAATTTGAAAGTTTTGAAGCTAATATTCAAACGCAAATAAACGAT
TTATTAGCATTTGATTTAGATACAACACTTATCAATCAATTGAAAGATAAACATCAACAA
CTGAAAACTATTTTATATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1351 [new locus tag: NWMN_RS07620 ]
- symbol: NWMN_1351
- description: hypothetical protein
- length: 1146
- theoretical pI: 4.81559
- theoretical MW: 133107
- GRAVY: -0.568063
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Other ribosome-associated GTPase EngA (TIGR03594; HMM-score: 67.4)Unknown function General small GTP-binding protein domain (TIGR00231; HMM-score: 55.5)and 4 moreProtein fate Protein modification and repair [FeFe] hydrogenase H-cluster maturation GTPase HydF (TIGR03918; HMM-score: 50)Protein synthesis Other GTP-binding protein Era (TIGR00436; HMM-score: 28.5)Protein synthesis Other ribosome biogenesis GTP-binding protein YsxC (TIGR03598; HMM-score: 28.1)Energy metabolism Amino acids and amines ethanolamine utilization protein, EutP (TIGR02528; HMM-score: 19)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: P-loop_NTPase (CL0023) Dynamin_N; Dynamin family (PF00350; HMM-score: 209.6)and 9 moreMMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 63.2)FeoB_N; Ferrous iron transport protein B (PF02421; HMM-score: 26.4)RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 25.5)GTP_EFTU; Elongation factor Tu GTP binding domain (PF00009; HMM-score: 20.2)ArgK; ArgK protein (PF03308; HMM-score: 14.9)AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 13.5)no clan defined E1_FCCH; Ubiquitin-activating enzyme E1 FCCH domain (PF16190; HMM-score: 12.9)P-loop_NTPase (CL0023) AAA_18; AAA domain (PF13238; HMM-score: 11.9)AAA_28; AAA domain (PF13521; HMM-score: 6.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.012476
- TAT(Tat/SPI): 0.001
- LIPO(Sec/SPII): 0.001018
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MINKEQLDLLYKLKKEVEKSRNEALLHTINQVIKKVYLQQYTCSFVGHFSAGKSTLINLLIEQDILPSSPVPTTSNTAIVSVSDNHDIIANLPNQTYAKLSNYDEVREMNRQNVDVESVEINFQSAKFENGFTLQDTPGVDSNVASHQSITEQYMYTSNMIFYTVDYNHVQSELNFKFMKHINDVGIPVVFIINQIDKHQDDELSFSTFKSRVEKSIADWGIKLERTFYVSKFDHPENELEVLSSYLISLDQHRETIEDYTSRTVEYITEAQLDYIQSEIQEVLEDLGIEEAEFEQAFLNSQQHQAISEEAQLLNNPDELMAFLKNKRKNILENAYIMPHNMREMLRSYLESMSQDFNVGGFFNKKKKKLQIQQQRLLTATDALQEHVNQQIRQPMREDMSFVTRFINKKEASDKVLNQHYDVKPEMIEGLYQPQTSISNTYVLTFSDEVVKAIKKYVEQQSTPIFKEIIENVQADELPTEESDDLKEYQRYTELNELRQSLTTKNYRHYYIHLDESLDKLIGRQETTYQVATDNAQDNRDNQQLNQNTATTNMSIDIQKALDIISDVPLFKRTKQDIHETLTRIDNKLIKIGVFGTFSAGKSSLINALLGEHILVSSPNPTTAATTEISYGDESYITLKSQSQLLDEINAVVEYQDMSYSTIEDFINSDLEKLKSHLNKNQLAFIQAVEKHYKLYVNMLENGEKHAINQQELKKWSAEDEYATFVKTVHIALMHDWLKGKIIVDSLGLHSNNQRHTNETEQILTSSDLILYVSYFNHSFTDNDKAFIEHMKDMNQLNENQAFKMVINAADLAESQDDLEAVETYVSDALRQVHLQSDIFAVSSRNALQAEDKGIDQLKQSIQQFVDVESKSILEQQMIHQLQQMDRSYVEMITEFETNKADISRRQQRLTDYKDKQRLQHQLIDATLQHTDNEVEEQVYHLNARLKLQLLDDVKSVFNSQMTQNSDFNEEKKVSTRVYLDQIHQRLFLEQSLITERIKKYFNKQLTEQIAPIVQQLADLHVIINPQFNFESANIEQPLLHIDFNDMLNALPKQLTKRKILNPNGQRDIHESICQSTLGLLQPQMGLLRQQLELYVKQMAVEAESQFESFEANIQTQINDLLAFDLDTTLINQLKDKHQQLKTILY
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.